species:   Rhsol
pid:       PID0575
parent:    Rhi-milR-22
paralog:   
locus:     KB317742.1:6395-6475
matures:   ['AGCGAGUUGCAGUUCCUGGAUGC', 'UUCCAGGUACAAGCUGUAUCUCCUAU']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317742.1:6395-6475

5 out of bounds
52 alignments
4 proper strand
4 stranded perfect matches

        ************************            ***************************          
AAGAAAGCCUAGCGAGUUGCAGUUCCUGGAUGCUUAUUAAUAAGCUUCCAGGUACAAGCUGUAUCUCCUAUAUUCAUAUAG
.........(((.(((.(((((((((((((.(((((....))))).))))))....))))))).))))))...........
----------AGCGAGUUGCAGUUCCUGGAUGC------------------------------------------------ l=23 a=0 c
---------------------------------------------UUCCAGGUACAAGCUGUAUCUCCUAU---------- l=26 a=0 c*
----------AGCGAGUUGCAGUUCCUGGAUG------------------------------------------------- l=22 a=2 ma
----------------------------------------------UCCAGGUACAAGCUGUAUCUCCUAU---------- l=25 a=0 ma*

----AAGCCUAGCGAGUUGCAGUUCCUGG---------------------------------------------------- l=25 a=1 
--------CUAGCGAGUUGCAGUUCCUGGAUGC------------------------------------------------ l=25 a=1 
----------AGCGAGUUGCAGUUCCUGGAUG------------------------------------------------- l=22 a=2 (ma)

mb-01011
ax-1011011
ku-01
ss-101111001100
fn-001
